Sessions del curs de bioinformàtica
Biological Introduction
Comparison of sequences I: Dot Matrix
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Comparison of sequences II : Pairwise alignment
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Alggen tool for windows
.
Exemple with two sequences (for MALIG)
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Multiple alignment
.
Comparison of large sequences (Suffix trees, MUMs)
.
MG-CAT tool
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Sets of bacteria genomes
.
Sequence assembly
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Exact matching
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JAVA tool for BOM and SBOM.
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Promo
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Papers
Suffix arrays: A new method for on-line string searches
Udi Mamber i Gene Myers.
Reducing storage requirements for biological sequence comparison
Michel Roberts, ....
De novo repeat classification and fragment assembly
P. Pevzner,...
STRING: finding tandem repeats in DNA sequences
Valerio Parisi,...
Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences
Tiee-Jian Wu,...
A probabilistic measure for alignment-free sequence comparison
Tuan D Pham,...