CONREPP: Search for consecutive repeated patterns


Select one procedure:
1: pp...p
Consecutive repeats of a given patterns p (Ex. ATR TTY).
2: pp...p
Strings larger than composed by repeated patterns of length l ( < l < ) of characters from the alphabet : 0={A,C,T,G,N} 1={R,Y,N}.
3: pp...pqq...q
Consecutive repeats of a given patterns p (Ex. ATR TTY) and their inverses q (Ex. YAT RAA).
4: pp...pqq...q
Consecutive repeats of any pattern p of a given length l and their inverses q.
5: .................
The n most frequents patterns of length l <15 shifting bases.
6: ...(.p.p..p.)....
Clusters of length L that contains at least n repeats of pattern p (Ex. ATR).
7: ...(.p.p..p.)....
Clusters of length L<10000 that contains at least n repeats of any pattern of length l<10 with information (0=NO 1=YES) about clusters (Not active)
Minimum number of consecutive repeats Only for procedures 1,3,and 4.
Scale factor of the graphical view
Only for procedures 1,2, 3,and 4.
Select one entry file type:
1:
2: .gbk file
3: Fasta (and .PTT files)
Fasta file: PTT file:
4: File from our DB