Publications, Workshops, Posters, ...
2021
- Communications:
- Papers:
- Juan A. Subirana, Xavier Messeguer
Tandem Repeats in Bacillus: Unique Features and Taxonomic Distribution
International Journal of Molecular Sciences 22(10),5373; https://doi.org/10.3390/ijms22105373
- William R. Blevins, Jorge Ruiz-Orera, Xavier Messeguer, Bernat Blasco-Moreno, José Luis Villanueva-Cañas, Lorena Espinar, Juana Díez, Lucas B. Carey & M. Mar Albà
Uncovering de novo gene birth in yeast using deep transcriptomics
Nature Communications 12, 604 (2021). https://doi.org/10.1038/s41467-021-20911-3
2020
2019
2018
- Papers:
- Ruiz-Orera, J., Grau-Verdaguer, P., Villanueva-Cañas, J-L., Messeguer, X., Albà, M.M.
Translation of neutrally evolving peptides provides a basis for de novo gene evolution.
Nature Ecology and Evolution, vol. 2: 890¿896, https://doi.org/10.1038/s41559-018-0506-6
2017
2015
2014
2013
2012
2011
2010
- The highest-cited paper in spain from 1999 to 2009 where
all the paper's authors are based in the given country
(ScienceWatch-Thomsom Reuters).
J. Rozas, J.C Sánchez, X. Messeguer and R. Rozas
DnaSP, DNA polymorphism analysis by the coalescent
and other methods
Bioinformatics, 19 (18): 2496-2497, 2003.
- Papers:
- Conferences:
- Juan A. Subirana, Ezequiel Anokian, Tadeo Moreno,
Joan Pous, Xavier Messeguer and J. Lourdes Campos
Biophysical features of nom-coding genome sequences
Biophysical Society, 54TH Annual Meeting, San Francisco,
California
2009
2008
- Conferences:
- B. Gel and X. Messeguer
Implementing an interactive web-based DAS
client
2ond International Workshop on Practical Applications of
Computational Biology & Bioinformatics (IWPACBB'08)
Advances in Soft Computing Series 49/2009, 83-91.
- T. Treangen and X. Messeguer
Novel computational methods for large scale genome comparison
2ond International Workshop on Practical Applications of
Computational Biology & Bioinformatics (IWPACBB'08)
Advances in Soft Computing Series 49/2009, 68-73.
- T. Treangen and X. Messeguer
Gapped extension for local multiple alignment of
interspersed DNA repeats
ISBRA 2008 (4-th International Symposium on
Bioinformatics Research and Applications), Atlanta,
Georgia.
LNCS 4983,74-86, 2008.
- B. Gel, M. Monzo and X. Messeguer
Computational prediction of human gene targets for
thw Epstein-Barr virus microRNAs.
VIII Jornadas de Bioinformática, Valencia.
- B. Gel, J.F. Abril and X. Messseguer
GenomeMap: an interactive genome browser
VIII Jornadas de Bioinformática (Demo), Valencia.
2007
- Papers:
- Conference:
- T. Treangen, N. Modi and X. Messeguer
The optimized search for common unique substribgs, on
both forward and reverse strands, in multiple DNA
sequences
BIRD'07 (paper-poster)
2006
- Papers:
- Conferences
- Web tools designed:
2005
- Papers:
- E. Blanco, D. Farre, M Mar Alba, X. Messeguer and R. Guigo
ABS: a database of Annotated regulatory Binding Sites
from orthologous promoters
Nucleic Acid Research34, D63-D67
- D. Dominguez-Sal, X. Messeguer and J.A.Subirana
FibreHelix: A programe for calculating the X ray
diffraction pattern of macromolecules with helical
symmetry: Aplications to DNA coiled-coils
Acta Cryst. D61, 203---206
- J. Ribes, J. Gálvez, A. Melià, R. Cleries, X. Messeguer
y F.X. Bosch
Automatización de un registro hospitalario de tumores
(RHT). Experiencias del RHT del Instituto Catalán de
Oncología
Gaceta Sanitaria 2005; 19(3)221-228
- Conferences:
- T. Treangen and X. Messeguer
M-GCAT: Multiple Genome Comparison and Alignment
tool
(Accepted for Academic software demo)
13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005).
- T. Treangen and X. Messeguer
M-GCAT: Multiple Genome Comparison Software
(Accepted for Academic software demo)
4th European Conference on Computational Biology (ECCB 2005).
- Posters:
- D. Farré, X. Messeguer and MM. Albà
Promoter divergence in mammals
4th European Conference on Computational Biology (ECCB05).
2004
- Workshops:
- T. Treangen and X. Messeguer
M-GCAT: Multiple Genome Comparison and Alignment Tool
V Jornadas de Bioinformática, Barcelona
2003
- Papers:
- J. Rozas, J.C Sánchez, X. Messeguer and R. Rozas
DnaSP, DNA polymorphism analysis by the coalescent
and other methods
Bioinformatics, 19 (18): 2496-2497.
- R. Roset, J.A. Subirana and X. Messeguer.
MREPATT: detection and analysis of exact consecutive
repeats in genomic sequences (Abstract and Full text)
Bioinformatics 19 (18): 2475-2476.
- D. Farré, R. Roset, M.Huerta, J.E.Adsuara,
LL.Roselló, M.M.Albà and X. Messeguer.
Identification of Patterns in Biological Sequences at the
ALGGEN Server: PROMO and MALGEN:(Abstract)(Full
text)
Nucleic Acids Research,31 (13):3651-3653
- R. Baeza-Yates, J. Gabarró and X. Messeguer.
Fringe Analysis of Synchronized Parallel Insertion
Algorithms in 2-3 Trees.
Theoretical
Computer Science, 299 (1-3):231-271 .
- Workshops
- N. Modi and X. Messeguer
Space and time efficient comparison of genomes
IV Jornada de Bioinformática, La Coruña
- E. Balco, X. Messeguer and R. Guigó
Exploring new methods of sequence analysios:
meta-alignment of promoter sequences
IV Jornada de Bioinformática, La Coruña
- Posters:
- Blanco, E., Messeguer, X. and Guigó, R.
Alignment of promoter regions by mapping nucleotide
sequences into arrays of transcription factor binding
sites
Recomb 2003
2002
- Papers:
- N. Santiago, C. Herraiz, J.R. Goñi, X. Messeguer and
J.M. Casacuberta. Genome-wide analysis of the Emigrant
family of MITEs: of Arabidopsis thaliana
Journal of Molecular Biology and Evolution.
19(12):2285-2293
- X. Messeguer, R. Escudero, D. Farré,
O. Núñez,, J. Martínez and M.M. Albà.
PROMO: detection of known transcription regulatory
elements using species-tailored searches.
Bioinformatics 18, (2), 333-334.
- Posters
- J. Ribes, J. Galvez, A. Melià, X. Messeguer,
F.X. Bosch.
Automatització de l'extracció de dades
d'un registre hospitalari de tumors
XXVII Reunion du groupe pour l'epidemiologie et
l'enregistrement du cancer dans les pays de langue latine.
Napoli, Castel dell Ovo.
- N. Santiago, C. Herráiz, R. Goñi, X. Messeguer,
J.M. Casacuberta.
Genome-wide analysis of the Emigrant family of
MITEs: amplification dynamics and evolution of genes in
Arabidopsis Thaliana.
ESF Scientific Network: Retrotransposons: their
impact on organism, genomes and biodiversity.
2nd WORKSHOP, Vuoranta, Helsinki, Finland.
- Invited talks
- X.Messeguer.
Multi-alignment of genomes
II International School on Computationa Biology
Le Havre University, France
2001
- Conferences, workshops:
- N. Santiago, C. Herráiz, X. Messeguer, J.M. Casacuberta.
Análisis de la familia Emigrant de MITEs en el
genoma de Arabidopsis: una aproximación
bioinformática.
VI Reunión de Biología Molecular de
Plantas
Toledo
- X. Messeguer, R. Escudero, D. Farré,
O. Núñez,, J. Martínez and M.M.Albà.
Identification of transcription factor binding sites
in DNA sequences by a computational approach.
II Jornadas de Bioinformática
Málaga
- J. Rozas, J.C. Sánchez, X. Messeguer y J. Rozas.
Análisis de procesos evolutivos por
métodos de Montecarlo: Implementación en el
software DnaSP.
II Jornadas de Bioinformática
Málaga
- Posters:
- E. Blanco, G. Parra, S. Castellano, J.F. Abril, M. Burset,
X. Fustero, X. Messeguer and R. Guigó.
Gene Prediction in the Post-Genomic Era.
IX ISMB
Copenhagen, Denmark.
2000
- Talks:
- J.F. Abril,E. Blanco, M.Burset, S. Castellano,X. Fustero,
X. Messeguer, G. Parra y R. Guigó.
Identificación computacional de genes:
situación actual y direcciones futuras.
I Jornadas de Bioinformática
Cartagena
- Posters:
- M.M. Albà, P. Kellam, R. Myers, R. Jenner,
J. Martínez, O. Nuñezand X. Messeguer.
PROMO: a virtual laboratory for the prediction of
transcription factor binding sites.
VI Genes, Protein and Computers International Conference
Chester (UK)
- M.M. Albà, P. Kellam, R. Myers, R. Jenner,
J. Martínez, O. Nuñez, X. Messeguer.
PROMO: a virtual laboratory for the prediction of
transcription factor binding sites.
I Jornadas de Bioinformática
Cartagena
- X. Messeguer, J. Delgado y A. Lozano.
ALGGEN: portal WEB para aplicaciones
bioinformáticas.
I Jornadas de Bioinformática
Cartagena